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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_124614783_124620392_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
124614783 - 124620392
Intron Length:
5610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTGTT
5'SS Class:
major
3'SS Sequence:
TCTTCATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TGTTCTTCATTT
Flanking Amino Acid:
NEPIPEKLPQNGEAGKETEE
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
79.1
34.5
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
87.3
0.84
0.7
85
28.5
Minor 5ss
41.1
-1
3.1
58.6
46
Minor BPS
56.9
0.3
1.8
76.79
40.3

Associated Gene:

Gene:
STAU2
Ensembl Gene ID:
ENSAPLG00000005175
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025342
124503068 - 124651455
148388
ENSAPLT00000005398
124555287 - 124651455
96169
ENSAPLT00000044400
124503068 - 124655898
152831