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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_124643472_124645810_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
124643472 - 124645810
Intron Length:
2339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGACAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAG
U12 Branch Point Sequence:
AGTGCCTTACGT
Flanking Amino Acid:
PPKNNVNNNPGSITPTVELN
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
69.6
36.5
Major BPS
49
-0
1.8
57.4
49.1
Major PPT
91.2
0.93
0.7
84.6
36
Minor 5ss
37.4
-1.4
3
47.2
48.2
Minor BPS
51
0.11
2
70.74
46

Associated Gene:

Gene:
STAU2
Ensembl Gene ID:
ENSAPLG00000005175
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044400
124503068 - 124655898
152831
ENSAPLT00000025342
124503068 - 124651455
148388
ENSAPLT00000005398
124555287 - 124651455
96169