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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_124645971_124650071_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
124645971 - 124650071
Intron Length:
4101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTCA
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTCTTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAC
U12 Branch Point Sequence:
TTTGTCTTGAAG
Flanking Amino Acid:
LNERGPAHAKMFTVQLTLGE
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.4
31.8
Major BPS
68.8
0.47
1.2
63.4
44
Major PPT
72
0.5
1.1
71.9
38.4
Minor 5ss
37
-1.5
3.2
47.9
47.8
Minor BPS
59.4
0.15
1.7
66.96
41

Associated Gene:

Gene:
STAU2
Ensembl Gene ID:
ENSAPLG00000005175
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044400
124503068 - 124655898
152831
ENSAPLT00000025342
124503068 - 124651455
148388
ENSAPLT00000005398
124555287 - 124651455
96169