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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_124650203_124651247_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
124650203 - 124651247
Intron Length:
1045

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTATTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTATCCACAAAA
Flanking Amino Acid:
VDPAPASNSPAPLQDNMANP
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
71.4
41.2
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
89.4
0.89
0.7
84.1
29.7
Minor 5ss
45.7
-0.5
2.5
58.3
46.4
Minor BPS
53.9
0.12
1.9
71.62
39.5

Associated Gene:

Gene:
STAU2
Ensembl Gene ID:
ENSAPLG00000005175
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044400
124503068 - 124655898
152831
ENSAPLT00000025342
124503068 - 124651455
148388
ENSAPLT00000005398
124555287 - 124651455
96169