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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_124651456_124652651_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
124651456 - 124652651
Intron Length:
1196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTCAGTAGT
5'SS Class:
major
3'SS Sequence:
TTGTTTATTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
CTTTGTTTATTA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.3
72.7
44.5
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
86.1
0.81
0.8
81
35.3
Minor 5ss
32.4
-2
2.7
35.1
40.7
Minor BPS
50.9
0.02
2
66.17
41.5

Associated Gene:

Gene:
STAU2
Ensembl Gene ID:
ENSAPLG00000005175
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044400
124503068 - 124655898
152831