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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_124692859_124698001_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
124692859 - 124698001
Intron Length:
5143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTAATTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTTTTCTTAATT
Flanking Amino Acid:
NEKSVQNSITQWIVDMEGAP
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
72
0.5
0.8
69.9
36.1
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
90.1
1.34
0.7
99.4
21.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004972
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005138
124689216 - 124700063
10848