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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_124698094_124700060_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
124698094 - 124700060
Intron Length:
1967

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GTA|GCAACCCTA
5'SS Class:
weak_major
3'SS Sequence:
AATTTCTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AATATTTGAACT
Flanking Amino Acid:
VKRLQKELLAL
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.3
0.03
1.4
53.1
43.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
78.8
0.65
0.8
70.8
40.1
Minor 5ss
38.5
-1.3
4.2
57.5
42.3
Minor BPS
58.9
0.36
1.4
73.07
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004972
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005138
124689216 - 124700063
10848