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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_124726578_124728640_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
124726578 - 124728640
Intron Length:
2063

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTTTCTTCTACA
Flanking Amino Acid:
GTIKAMLSGPGQFAENETNE
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
80.7
33.8
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
92.7
0.96
0.6
88.1
21.9
Minor 5ss
34.6
-1.7
2.9
43
44
Minor BPS
63.5
0.42
1.9
79.64
36.2

Associated Gene:

Gene:
ELOC
Ensembl Gene ID:
ENSAPLG00000016969
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023864
124726387 - 124728800
2414