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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_124750164_124751595_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
124750164 - 124751595
Intron Length:
1432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATCCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATAACATGAAAT
Flanking Amino Acid:
SDLEMSYTFCDSAVHDFMFN
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83.1
0.74
0.7
78.5
29.9
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
48.5
-0
1.8
68.54
40.9

Associated Gene:

Gene:
LY96
Ensembl Gene ID:
ENSAPLG00000004845
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004988
124750070 - 124755088
5019