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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_124751686_124752678_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
124751686 - 124752678
Intron Length:
993

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
ATGTCTCTACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTTTTCTTACTT
Flanking Amino Acid:
IWHAALTWVPKSDIAFLKVV
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
0.9
71.2
34.5
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
67
0.38
1
60.3
40.9
Minor 5ss
30.8
-2.2
2.9
35.8
34.5
Minor BPS
75.4
0.88
1.5
91.07
32.9

Associated Gene:

Gene:
LY96
Ensembl Gene ID:
ENSAPLG00000004845
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004988
124750070 - 124755088
5019