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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_124752808_124753670_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
124752808 - 124753670
Intron Length:
863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TATATTGTAATT
Flanking Amino Acid:
EYYVCEMLKGETITTTFDIK
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1.2
81.8
38.5
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
84.7
0.78
0.8
78.9
33.2
Minor 5ss
34.8
-1.7
2.7
42.5
44.3
Minor BPS
51.3
0.12
2
72.89
38.6

Associated Gene:

Gene:
LY96
Ensembl Gene ID:
ENSAPLG00000004845
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004988
124750070 - 124755088
5019