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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_124753724_124754986_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
124753724 - 124754986
Intron Length:
1263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTTTC
5'SS Class:
major
3'SS Sequence:
CATTGGAATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATTTCCTTATTT
Flanking Amino Acid:
IKGKRTIFPKGDYSVIIEAF
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.3
35.6
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
60.1
0.23
1
56
43.4
Minor 5ss
43.8
-0.7
3
61.8
43
Minor BPS
77.1
0.93
1.5
90.41
33.6

Associated Gene:

Gene:
LY96
Ensembl Gene ID:
ENSAPLG00000004845
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004988
124750070 - 124755088
5019