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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_124821708_124823562_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
124821708 - 124823562
Intron Length:
1855

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAAG
5'SS Class:
strong_major
3'SS Sequence:
GTGTTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAG
U12 Branch Point Sequence:
TGTTTTTTACAG
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.9
77.9
38.6
Major BPS
58.2
0.2
1.5
67.3
37.8
Major PPT
85.4
0.8
0.9
79.9
37.7
Minor 5ss
38.7
-1.3
2.8
47.8
47.9
Minor BPS
52
-0
1.8
60.52
41.6

Associated Gene:

Gene:
JPH1
Ensembl Gene ID:
ENSAPLG00000004829
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004980
124821606 - 124907232
85627