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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12482323_12503909_F

Intron Information:

Intron Rank:
127496
Intron Class:
major
Intron Phase:
Intron Coordinates:
12482323 - 12503909
Intron Length:
21587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCCCA
5'SS Class:
major
3'SS Sequence:
TTCCATCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TAATTCTCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
64.3
41.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
83.5
0.75
0.8
80.7
30.9
Minor 5ss
38.3
-1.3
3
45.9
43.3
Minor BPS
55.5
0.25
1.8
74.27
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018762
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031112
12481257 - 12503997
22741