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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_124823659_124832015_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
124823659 - 124832015
Intron Length:
8357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTATCTTTATTT
Flanking Amino Acid:
AVEKEVANSSGPNSVMIALV
Intron Amino Acid Position:
774

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
84.8
32.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
85.1
0.79
0.8
82.1
33.8
Minor 5ss
38.9
-1.3
2.8
53.8
42.8
Minor BPS
70.4
0.72
1.5
84.48
36.6

Associated Gene:

Gene:
JPH1
Ensembl Gene ID:
ENSAPLG00000004829
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019419
124822656 - 124907232
84577
ENSAPLT00000004980
124821606 - 124907232
85627
ENSAPLT00000041249
124822657 - 124907232
84576
ENSAPLT00000019556
124823308 - 124907232
83925