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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_124832681_124853223_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
124832681 - 124853223
Intron Length:
20543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTATA
5'SS Class:
strong_major
3'SS Sequence:
TACTATTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTGTTTTAATC
Flanking Amino Acid:
RELSPNFYQPGPDYIKQKFQ
Intron Amino Acid Position:
552

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
89
24.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
81.6
0.71
0.9
73
41.5
Minor 5ss
39.4
-1.2
2.8
51.5
45
Minor BPS
71.1
0.64
1.3
77
33.7

Associated Gene:

Gene:
JPH1
Ensembl Gene ID:
ENSAPLG00000004829
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019556
124823308 - 124907232
83925
ENSAPLT00000019419
124822656 - 124907232
84577
ENSAPLT00000004980
124821606 - 124907232
85627
ENSAPLT00000041249
124822657 - 124907232
84576