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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12484804_12486174_F

Intron Information:

Intron Rank:
130312
Intron Class:
major
Intron Phase:
Intron Coordinates:
12484804 - 12486174
Intron Length:
1371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTCATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
AAATCCTATACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
77
34.4
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
77.7
0.62
1
74.8
39.6
Minor 5ss
42
-0.9
2.8
53.8
43.7
Minor BPS
51.5
0.04
2
63.9
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020100
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031667
12482649 - 12486631
3983