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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_124853343_124899416_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
124853343 - 124899416
Intron Length:
46074

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTAT
5'SS Class:
strong_major
3'SS Sequence:
CTACTCTGTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TGCATATAAACT
Flanking Amino Acid:
ARTKVEIATSRTAHARAKAD
Intron Amino Acid Position:
512

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
85.7
25.6
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
73.8
0.54
1
68.1
37.3
Minor 5ss
48
-0.2
2.5
66.4
45.1
Minor BPS
47.6
-0.1
1.9
66.11
44.2

Associated Gene:

Gene:
JPH1
Ensembl Gene ID:
ENSAPLG00000004829
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004980
124821606 - 124907232
85627
ENSAPLT00000041249
124822657 - 124907232
84576
ENSAPLT00000019556
124823308 - 124907232
83925
ENSAPLT00000019419
124822656 - 124907232
84577