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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_124900174_124906454_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
124900174 - 124906454
Intron Length:
6281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGCGCC
5'SS Class:
major
3'SS Sequence:
CTTACTTTAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ACTTCCTAAATT
Flanking Amino Acid:
GYGVETYGDGGTYQGQWTGG
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
62.1
38.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
65.8
0.36
1.1
67.6
36.7
Minor 5ss
30.8
-2.2
3.5
41.3
45.5
Minor BPS
69.9
0.7
1.6
81.92
40.2

Associated Gene:

Gene:
JPH1
Ensembl Gene ID:
ENSAPLG00000004829
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019419
124822656 - 124907232
84577
ENSAPLT00000004980
124821606 - 124907232
85627
ENSAPLT00000041249
124822657 - 124907232
84576
ENSAPLT00000019556
124823308 - 124907232
83925