About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_124931799_124932097_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
124931799 - 124932097
Intron Length:
299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCGA
5'SS Class:
strong_major
3'SS Sequence:
AATGCCTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
GATTCTCTGACA
Flanking Amino Acid:
HWTQSFSSQKVRLAIAEKAL
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.7
41.7
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
75
0.56
0.9
70.3
40.3
Minor 5ss
24.7
-2.9
3
29.8
43.1
Minor BPS
58.8
0.27
1.7
68.98
36.8

Associated Gene:

Gene:
GDAP1
Ensembl Gene ID:
ENSAPLG00000013167
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013719
124931727 - 124940279
8553