About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_124932291_124933464_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
124932291 - 124933464
Intron Length:
1174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATCCTA
5'SS Class:
major
3'SS Sequence:
AACTGTATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCTTTTCTAACT
Flanking Amino Acid:
IDYLEATFVDEEVPRLMPEE
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1.1
63.5
42.4
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
70.5
0.46
1
62.8
42.2
Minor 5ss
41.7
-0.9
3.1
53.5
44.7
Minor BPS
67
0.61
1.6
83.74
37.5

Associated Gene:

Gene:
GDAP1
Ensembl Gene ID:
ENSAPLG00000013167
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013719
124931727 - 124940279
8553