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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_124933639_124936911_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
124933639 - 124936911
Intron Length:
3273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTATGTACT
5'SS Class:
major
3'SS Sequence:
TCTTTTGTATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TCTTTTGTATCA
Flanking Amino Acid:
IPAYATSRIRSQISNTESEL
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1
72.6
36.3
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
81.2
0.7
0.9
81.4
35
Minor 5ss
46.3
-0.4
2.5
62.6
36.5
Minor BPS
48.3
-0.1
2.2
65.74
41.7

Associated Gene:

Gene:
GDAP1
Ensembl Gene ID:
ENSAPLG00000013167
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013719
124931727 - 124940279
8553