About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_124937007_124937463_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
124937007 - 124937463
Intron Length:
457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTATATATTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
AAAACACTAACC
Flanking Amino Acid:
AYIAKQKRLKSKLLDHDNIK
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
79.7
27.9
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
70
0.45
1
67.6
42.9
Minor 5ss
34.5
-1.8
3
40.8
39.4
Minor BPS
47.4
-0.2
1.9
58.64
38.8

Associated Gene:

Gene:
GDAP1
Ensembl Gene ID:
ENSAPLG00000013167
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013719
124931727 - 124940279
8553