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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_124937579_124939896_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
124937579 - 124939896
Intron Length:
2318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGAAT
5'SS Class:
strong_major
3'SS Sequence:
TATCTCTAATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTATCTCTAATT
Flanking Amino Acid:
ELQRRNEETPEDGSQPWLCG
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
81.1
32.6
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
67.8
0.4
1
68.1
37.4
Minor 5ss
33.3
-1.9
3.3
47.8
47.9
Minor BPS
69.2
0.68
1.6
85.51
34.6

Associated Gene:

Gene:
GDAP1
Ensembl Gene ID:
ENSAPLG00000013167
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013719
124931727 - 124940279
8553