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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_125129184_125146683_F

Intron Information:

Intron Rank:
1
Intron Class:
minor-like
Intron Phase:
2
Intron Coordinates:
125129184 - 125146683
Intron Length:
17500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTTTTCTTA
5'SS Class:
weak_minor
3'SS Sequence:
TAAATAAACATAG|G
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGCCTTTTAAAT
Flanking Amino Acid:
HSKTNCKPVILYRSILQLVK
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
46.5
-0.2
1.2
47.3
37
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
52.1
0.05
1
45
40.1
Minor 5ss
58.9
0.3
2.3
71.5
39.8
Minor BPS
59.2
0.37
1.4
70.85
40

Associated Gene:

Gene:
PI15
Ensembl Gene ID:
ENSAPLG00000013351
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013925
125128858 - 125150053
21196