About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_125147085_125149917_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
125147085 - 125149917
Intron Length:
2833

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CCTTTCTTATTT
Flanking Amino Acid:
AVYLVCNYAPKGNWIGEAPY
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
77.3
26.4
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
90.3
0.91
0.7
88.7
27
Minor 5ss
36.8
-1.5
2.9
43.7
38.1
Minor BPS
62.5
0.47
1.6
74.56
43.3

Associated Gene:

Gene:
PI15
Ensembl Gene ID:
ENSAPLG00000013351
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013925
125128858 - 125150053
21196