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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_125197745_125218572_R

Intron Information:

Intron Rank:
135214
Intron Class:
major
Intron Phase:
Intron Coordinates:
125197745 - 125218572
Intron Length:
20828

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGAGG
5'SS Class:
major
3'SS Sequence:
TTTTTCCTTTGAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTTAT
U12 Branch Point Sequence:
ATGCACTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
64.3
47.1
Major BPS
71.3
0.53
1
61.3
37
Major PPT
72.4
0.5
1.7
85.4
29.3
Minor 5ss
30.3
-2.3
3.3
39.2
46.3
Minor BPS
50.8
0.1
1.8
68.95
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020121
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043310
125197456 - 125219861
22406