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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_125240697_125240843_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
125240697 - 125240843
Intron Length:
147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTTTAA
5'SS Class:
major
3'SS Sequence:
CTGGCTTTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
GTTCACTGATCT
Flanking Amino Acid:
IGQNLGAHWGRYRPPTFHVQ
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.1
73
34.2
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
69.8
0.45
0.9
64.3
36.7
Minor 5ss
38.2
-1.3
3.1
49.1
47.1
Minor BPS
49.3
0.03
1.9
72.91
42.9

Associated Gene:

Gene:
CRISPLD1
Ensembl Gene ID:
ENSAPLG00000013624
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014275
125219882 - 125259203
39322