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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_125244047_125245147_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
125244047 - 125245147
Intron Length:
1101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCTTCTTTGATC
Flanking Amino Acid:
GGCRENLCYREDSERPYSPH
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
80.6
31.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
73.5
0.53
1
70.3
39.3
Minor 5ss
41.4
-1
3.1
59
45.7
Minor BPS
74.4
0.75
1.1
76.89
33.8

Associated Gene:

Gene:
CRISPLD1
Ensembl Gene ID:
ENSAPLG00000013624
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014275
125219882 - 125259203
39322