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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_125245481_125245624_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
125245481 - 125245624
Intron Length:
144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TGTGTTTTATTT
Flanking Amino Acid:
RDQCKGTTCNRYECPAGCLD
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
81
28.7
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
84.9
0.78
0.7
84.9
29.7
Minor 5ss
36
-1.6
3.3
46.2
49.1
Minor BPS
54
0.2
1.7
71.36
40.7

Associated Gene:

Gene:
CRISPLD1
Ensembl Gene ID:
ENSAPLG00000013624
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014275
125219882 - 125259203
39322