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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_125245692_125246390_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
125245692 - 125246390
Intron Length:
699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAACATT
5'SS Class:
major
3'SS Sequence:
CATTGTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTGTCTGACAT
Flanking Amino Acid:
KVIGSVHYEMQSSICKAAIH
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
76.9
38.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
83.5
0.75
0.8
80.5
36.7
Minor 5ss
44.8
-0.6
3.1
63
42.8
Minor BPS
49
0.01
1.9
73.47
43.3

Associated Gene:

Gene:
CRISPLD1
Ensembl Gene ID:
ENSAPLG00000013624
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014275
125219882 - 125259203
39322