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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_125248294_125248383_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
125248294 - 125248383
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTACTTTATTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
TTTTACTTTATT
Flanking Amino Acid:
ANSFTVSKVTVQAITCETTV
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
1
92
25
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
82.3
0.73
0.9
81.5
35
Minor 5ss
38
-1.4
2.8
51.9
44.6
Minor BPS
69
0.68
1.8
89.22
35.1

Associated Gene:

Gene:
CRISPLD1
Ensembl Gene ID:
ENSAPLG00000013624
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014275
125219882 - 125259203
39322