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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_125474323_125492873_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
125474323 - 125492873
Intron Length:
18551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGCCTCTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACATAT
U12 Branch Point Sequence:
TTGTCTGTAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
89.9
23.2
Major BPS
66.4
0.41
1
61.3
37
Major PPT
75.5
0.57
0.8
72.9
31.9
Minor 5ss
48.6
-0.1
2.8
71.8
38.1
Minor BPS
68.1
0.65
2
87.35
38.8

Associated Gene:

Gene:
HNF4G
Ensembl Gene ID:
ENSAPLG00000011794
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012298
125474218 - 125510428
36211