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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12549258_12559045_F

Intron Information:

Intron Rank:
127499
Intron Class:
major
Intron Phase:
Intron Coordinates:
12549258 - 12559045
Intron Length:
9788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTACTCTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ACTACTGTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
73.2
0.52
1
69.2
36.8
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
51.3
0.12
2
70.38
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018762
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037801
12548994 - 12582887
33894