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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_125493043_125494914_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
125493043 - 125494914
Intron Length:
1872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTAAAG
5'SS Class:
major
3'SS Sequence:
TCGTCTCTGATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTTACCTTATTT
Flanking Amino Acid:
SIRKNHVYTCRFNRQCVVDK
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
66.2
39.1
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
68.2
0.41
1
65
36.4
Minor 5ss
39
-1.2
2.8
48.6
47.2
Minor BPS
72.8
0.79
1.6
88.8
36.2

Associated Gene:

Gene:
HNF4G
Ensembl Gene ID:
ENSAPLG00000011794
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012298
125474218 - 125510428
36211