About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_125504293_125506337_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
125504293 - 125506337
Intron Length:
2045

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTTATATCAATC
Flanking Amino Acid:
SMGYKDILLLGNNYIIHRNS
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
72.6
0.51
1
71.4
33.4
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
51.6
0.03
1.8
68.4
36.9

Associated Gene:

Gene:
HNF4G
Ensembl Gene ID:
ENSAPLG00000011794
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012298
125474218 - 125510428
36211