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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_125506876_125509796_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
125506876 - 125509796
Intron Length:
2921

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
GTTATTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTCTTTTGAATT
Flanking Amino Acid:
DSLLQEMLLGGTSNDASHLH
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
86.1
0.81
0.8
80.7
36.7
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
66.2
0.59
1.4
79.72
37

Associated Gene:

Gene:
HNF4G
Ensembl Gene ID:
ENSAPLG00000011794
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012298
125474218 - 125510428
36211