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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_125509920_125510309_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
125509920 - 125510309
Intron Length:
390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
AATTCTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCTTTATGAATT
Flanking Amino Acid:
MSTPVHAEQISTPETPLPSP
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
81.8
31
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
82.6
0.73
0.9
73.8
40.7
Minor 5ss
40
-1.1
2.9
57.3
41.2
Minor BPS
58.8
0.36
1.7
77.48
39.2

Associated Gene:

Gene:
HNF4G
Ensembl Gene ID:
ENSAPLG00000011794
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012298
125474218 - 125510428
36211