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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12559084_12582736_F

Intron Information:

Intron Rank:
127500
Intron Class:
major
Intron Phase:
Intron Coordinates:
12559084 - 12582736
Intron Length:
23653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTCTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCATCTTTATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
76.2
39.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
79.8
0.67
0.8
77.9
36.6
Minor 5ss
37.6
-1.4
3.3
49
41.4
Minor BPS
65.1
0.45
1.6
70.76
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018762
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037801
12548994 - 12582887
33894