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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_125791268_125791378_F

Intron Information:

Intron Rank:
126891
Intron Class:
major
Intron Phase:
Intron Coordinates:
125791268 - 125791378
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATGCAA
5'SS Class:
major
3'SS Sequence:
TCCCCATTCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTGTTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
60.4
39.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
71.1
0.47
0.8
69.1
30.2
Minor 5ss
30.3
-2.3
3.2
35.3
42.4
Minor BPS
58
0.33
2.1
78.98
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018351
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018736
125790816 - 125792682
1867