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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_125872179_125880658_R

Intron Information:

Intron Rank:
139034
Intron Class:
major
Intron Phase:
Intron Coordinates:
125872179 - 125880658
Intron Length:
8480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CCATTGACTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTCCATTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.7
90.9
28.7
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
70.5
0.46
1
66.3
39.3
Minor 5ss
39.3
-1.2
2.8
50.6
45.9
Minor BPS
72.6
0.79
1.6
90.63
32.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022285
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037168
125870403 - 125883454
13052