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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_125883158_125884134_R

Intron Information:

Intron Rank:
139029
Intron Class:
major
Intron Phase:
Intron Coordinates:
125883158 - 125884134
Intron Length:
977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTATCTCCTCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATTAT
U12 Branch Point Sequence:
ATCTCCTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
72.1
0.55
1.1
62.3
43.7
Major PPT
71
0.47
1
69
37.2
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
68.2
0.65
1.7
81.92
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022285
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044873
125882988 - 125907507
24520
ENSAPLT00000030812
125880763 - 125931948
51186
ENSAPLT00000024588
125883145 - 125884628
1484