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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_125884165_125907460_R

Intron Information:

Intron Rank:
139037
Intron Class:
major
Intron Phase:
Intron Coordinates:
125884165 - 125907460
Intron Length:
23296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTATGCTGATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
75.5
29.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
85.1
0.79
0.7
79.7
25.6
Minor 5ss
41.1
-1
2.6
50.2
46.2
Minor BPS
49.2
0.02
2.1
73.66
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022285
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044873
125882988 - 125907507
24520