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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_125966343_125983411_R

Intron Information:

Intron Rank:
147128
Intron Class:
major
Intron Phase:
Intron Coordinates:
125966343 - 125983411
Intron Length:
17069

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGGG
5'SS Class:
major
3'SS Sequence:
ACCTCTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CCCTTCTGACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
60.8
44.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.1
0.7
0.8
72.6
37
Minor 5ss
33.4
-1.9
3.2
36.7
41.6
Minor BPS
49
0
1.8
63.41
47.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026470
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039765
125965899 - 125989668
23770