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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_126180191_126229747_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
126180191 - 126229747
Intron Length:
49557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTGTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTAGAT
U12 Branch Point Sequence:
TGGTCACTAAGT
Flanking Amino Acid:
FVKDCPQNELEEQGEDTEGS
Intron Amino Acid Position:
1105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.8
79.3
28.9
Major BPS
61.4
0.28
1.3
60.7
45.9
Major PPT
73.7
0.53
0.9
65.1
41.2
Minor 5ss
30.7
-2.2
2.6
33.5
35.6
Minor BPS
47.9
-0
2.2
70.86
45.4

Associated Gene:

Gene:
ZFHX4
Ensembl Gene ID:
ENSAPLG00000012910
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013439
126127555 - 126252124
124570