Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_126180191_126236419_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

126180191 - 126236419

Intron Length:

56229

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTGAGTAAC

5'SS Class:

strong_major

3'SS Sequence:

GTTTTTGGAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAA

U12 Branch Point Sequence:

GTGTTCTTAAAA

Flanking Amino Acid:

FVKDCPQNELGIVTPEKEPK

Intron Amino Acid Position:

1105

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.2

0.83

0.8

79.3

28.9

Major BPS

82.2

0.8

71.9

35.8

Major PPT

69.3

0.43

1.1

65.6

44.4

Minor 5ss

30.7

-2.2

2.6

33.5

35.6

Minor BPS

69.6

0.61

1.4

73.1

38.5

Associated Gene:

Gene:

ZFHX4

Ensembl Gene ID:

ENSAPLG00000012910

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036281

126127555 - 126252124

124570