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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_126236554_126236706_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
126236554 - 126236706
Intron Length:
153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGAA
5'SS Class:
strong_major
3'SS Sequence:
TGATGTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TGCATCTTAATT
Flanking Amino Acid:
PEDSKFCHEQFYQCPYCNYN
Intron Amino Acid Position:
1189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.7
33.5
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
80.2
0.68
0.9
77.1
41.8
Minor 5ss
27.9
-2.5
3.5
37.1
47.5
Minor BPS
68.7
0.66
1.3
76.87
40

Associated Gene:

Gene:
ZFHX4
Ensembl Gene ID:
ENSAPLG00000012910
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036281
126127555 - 126252124
124570
ENSAPLT00000013439
126127555 - 126252124
124570