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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_126244460_126250607_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
126244460 - 126250607
Intron Length:
6148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTCTA
5'SS Class:
major
3'SS Sequence:
TTGTTGTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
TGTGCATTGATG
Flanking Amino Acid:
SLPGFPQSSNTLTSPGAGML
Intron Amino Acid Position:
3093

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.1
39.4
Major BPS
76.2
0.65
1
67
39.8
Major PPT
86.6
0.82
0.8
84.6
36
Minor 5ss
40
-1.1
3
55.9
42.3
Minor BPS
51.6
-0
1.8
60.32
41.8

Associated Gene:

Gene:
ZFHX4
Ensembl Gene ID:
ENSAPLG00000012910
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036281
126127555 - 126252124
124570
ENSAPLT00000013439
126127555 - 126252124
124570