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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_126302368_126322543_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
126302368 - 126322543
Intron Length:
20176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTATCTATC
5'SS Class:
weak_major
3'SS Sequence:
TGTTTATTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTACACTAAAAT
Flanking Amino Acid:
SCAGALGAHLGKLCCFFSEE
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.41
1.2
68.8
42.3
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
81.8
0.72
0.8
74.4
40.4
Minor 5ss
55.3
0.18
2.1
63.1
41.7
Minor BPS
50
0.08
2
73.16
42.7

Associated Gene:

Gene:
PEX2
Ensembl Gene ID:
ENSAPLG00000001946
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001942
126301425 - 126322818
21394