About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_12633365_12637114_R

Intron Information:

Intron Rank:
147677
Intron Class:
major
Intron Phase:
Intron Coordinates:
12633365 - 12637114
Intron Length:
3750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TTATTCTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTATTTTATACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
86.2
0.81
0.8
80.9
31
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
52
0.14
2
75.67
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026803
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021546
12633344 - 12647225
13882
ENSAPLT00000046867
12633059 - 12648375
15317